Boutique Hotels in Marathon
Select your dates to find cozy boutique hotels in Marathon with a charming local feel.
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Hotels in Marathon
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Amazing 9+
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Pleasant 6+
Top Boutique Hotels Marathon
Discover the best boutique hotels in Marathon, celebrated for their unique style and personality.
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Most Booked
Our top hotel picks are based on price, location, and guest reviews to help you find the best stay.
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Closest to downtown
Highest Rated
99+
Fairfield Inn & Suites Marathon Florida Keys
Hotels in
Marathon
Featured facilities: Pool, Bar, Restaurant
Very Good
125 reviews
8.6
/10
1 night
From
RUB 12,308
Check availability
99+
Tranquility Bay Resort
Hotels in
Marathon
Featured facilities: Pool, Bar, Restaurant
Very Good
103 reviews
8.7
/10
1 night
From
RUB 18,040
Check availability
99+
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
Hotels in
Marathon
Featured facilities: Pool, Bar, Restaurant
Very Good
111 reviews
8.6
/10
1 night
From
RUB 10,707
Check availability
65
Luxury Gulf Front Villa!! Elevator~Tiki Bar~Boat Slip! Moon Deck/Pool~Gulf Front
Hotels in
Marathon
Featured facilities: Pool
Outstanding
51 reviews
10
/10
Check availability
58
Fall & Winter Specials! 5 Bdrm 5 Bath,Elevator, Private Pool,Dock, Walk to Beach
Hotels in
Marathon
Featured facilities: Private pool
Outstanding
67 reviews
10
/10
Check availability
83
Sleeps 10 - Private house with 110’ of Deep Water Dockage, Pool, Hot Tub & more!
Hotels in
Marathon
Featured facilities: Private pool
Outstanding
24 reviews
10
/10
Check availability
38
Majestic Marina View- 2/2.5 townhome looking over Hawks Cay Marina.
Hotel near
Duck Key,Marathon
Outstanding
23 reviews
9.8
/10
Check availability
31
SC2- Southern Comfort Two at 250 11th St.in Kcb. 2 Beds & 2 Baths. Private Pool
Hotel near
Key Colony,Marathon
Featured facilities: Private pool
Outstanding
53 reviews
9.8
/10
Check availability
32
SC3- Southern Comfort Three at 240 11th St. Kcb. Private Pool, Dock & Tiki Bar.
Hotel near
Key Colony,Marathon
Featured facilities: Private pool
Outstanding
28 reviews
10
/10
Check availability
33
SC1-Southern Comfort One at 310 11th St. in Kcb. Private Pool & Best Backyard.
Hotel near
Key Colony,Marathon
Featured facilities: Private pool
Outstanding
66 reviews
10
/10
Check availability
See All Boutique Hotels in Marathon
FAQs
What are the best places to stay in Marathon?
Some of the best places to stay in Marathon are near popular attractions like
Crane Point Hammock
,
Turtle Hospital
and
Turtle Hospital
, offering easy access to key sights and amenities.
What are the best family-friendly hotels in Marathon?
Families visiting Marathon often prefer hotels like
Fairfield Inn & Suites Marathon Florida Keys (from RUB 12,593)
,
Kingsail Resort (from RUB 7,344)
and
Coconut Cay Resort (from RUB 7,717)
, which are well-known for their family-friendly features of spacious family rooms and child-friendly services.
What are the top hotels in Marathon near Crane Point Hammock?
Some of the top hotels in Marathon near Crane Point Hammock include
Tropical Cottages (from RUB 7,369)
,
Sea Dell Motel - Marathon (from RUB 10,818)
and
Kingsail Resort (from RUB 7,344)
, all offering easy access to Crane Point Hammock, making them ideal for visitors looking to explore the area.
What's the best pet-friendly accommodation in Marathon?
Fairfield Inn & Suites Marathon Florida Keys (from RUB 12,593)
,
Kingsail Resort (from RUB 7,344)
and
Coconut Cay Resort (from RUB 7,717)
allow pets. Take your pets with you during your stay!
Where can I find the best hotel discounts in Marathon?
Trip.com provides various promotions and discounts for users all year round. You can check the
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to see what promotions are available on Trip.com.
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Hotels Near Popular Attractions
Hotels near Florida Keys Aquarium Encounters
Hotels near Sombrero Beach
Hotels near Turtle Hospital
Hotels near Coco Plum Beach
Most Viewed Hotels
Games Area, Free Htd Pool/Spa, Kayaks, 4Br/3BA, 75' Dock Deep Canal, Near Beach.
New to Vrbo SeaEsta! 1 Block to Sombero Beach! Bring your boat or rent ours!
4 Bedroom 3 Full Bath Home on Canal in Marathon w/Private 35 foot dock
Sleeps 10 - Private house with 110’ of Deep Water Dockage, Pool, Hot Tub & more!
Courtyard Faro Blanco Resort
Heart of Marathon with Gulf and Ocean access
Fall Weeks Available-Fully Updated Home w/Canal to Sombrero-Message to Inquire
Sombrero Beach Vacation 2/2 Condo
Tropical Oasis with Private Pool and Kayaks - Gorgeous Escape
Lots of Open 7+NT Weeks in Dec 2026 Even Xmas Week 3Br on Canal Pool Spa Hot Tub
The Reef at Marathon, Florida Keys
Great house and dock with close access to the Atlantic OceanVACA-23-415
Turtles Nest. Amazing 2/2 with private ramp, boat slip, heated pool and more!
Views ~ Pool~Private Hot Tub~FREE Boat Slip~Heaven!!!
Blackfin Resort and Marina
Coral Lagoon Resort Villas & Marina by KeysCaribbean
Tropical Retreat in the Heart of the Keys
Oceanfront and Sunrise Views!
Isla Marlin 28: Palm lined luxury villa w/dockage and sunset views
Waterfront 75’Dock POOL Kayaks Bikes SombreroBeach2mi OutdoorSpace WalkToStores
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