App
Customer Support
JPY
Find Bookings
Worldwide Coverage
Worldwide Coverage
Flights to over 5,000 cities
One-stop Service Guarantee
One-stop Service Guarantee
Price guaranteed upon confirmed payment, booking guaranteed once tickets issued
Secure Payment
Secure Payment
Convenient & reliable booking and payment system

Cheap flight deals from San Jose to San Juan Starting at JPY 15,527

We've found these cheap flights for you. You can book one-way or round-trip flight tickets.

  • One way
  • Round-trip
      • Cheapest nonstop
        SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Mon, Mar 31|San Jose - San Juan|avianca
        JPY 15,527JPY 22,270
        30% OFF
        30% OFF
        JPY 22,270JPY 15,527

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Mon, Mar 31, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 15,527 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Fri, Apr 18|San Jose - San Juan|avianca
        JPY 15,527JPY 22,270
        30% OFF
        30% OFF
        JPY 22,270JPY 15,527

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Fri, Apr 18, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 15,527 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Mon, Apr 7|San Jose - San Juan|avianca
        JPY 16,637JPY 22,270
        25% OFF
        25% OFF
        JPY 22,270JPY 16,637

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Mon, Apr 7, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,637 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Mon, May 5|San Jose - San Juan|avianca
        JPY 16,658
        JPY 16,658

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Mon, May 5, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,658 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Thu, Apr 3|San Jose - San Juan|avianca
        JPY 16,678
        JPY 16,678

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Thu, Apr 3, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,678 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Thu, Apr 17|San Jose - San Juan|avianca
        JPY 16,699
        JPY 16,699

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Thu, Apr 17, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,699 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Mon, Apr 28|San Jose - San Juan|avianca
        JPY 16,740
        JPY 16,740

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Mon, Apr 28, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,740 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Mon, May 19|San Jose - San Juan|avianca
        JPY 16,781
        JPY 16,781

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Mon, May 19, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,781 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Fri, Apr 4|San Jose - San Juan|avianca
        JPY 16,802
        JPY 16,802

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Fri, Apr 4, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,802 including taxes and charges.

      • SJO07:30 am
        3h 10m
        Nonstop
        SJU12:40 pm
        Fri, May 2|San Jose - San Juan|avianca
        JPY 16,925
        JPY 16,925

        Choose avianca flights from San Jose to San Juan. The one-way direct flight with avianca departs from Juan Santamaria International Airport on Fri, May 2, arriving at Luis Muñoz Marín International Airport. One-way Prices start from JPY 16,925 including taxes and charges.

      • SJO01:00 pm
        3h 5m
        Nonstop
        SJU02:00 pm
        Sat, Mar 1|San Jose - San Juan|avianca
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

San Jose to San Juan Flight Time

Flight info.
Departure
Arrival
Weekly Schedule

  1. AV693

    avianca

    02:15 am

    SJO

    2.2h

    05:25 am

    BOG

    SMTWTFS
    Search

  2. AV258

    avianca

    12:50 pm

    BOG

    2.8h

    04:40 pm

    SJU

    SMTWTFS

  3. AV693

    avianca

    02:15 am

    SJO

    2.2h

    05:25 am

    BOG

    SMTWTFS
    Search

  4. AV214

    avianca

    08:00 am

    BOG

    2.9h

    11:55 am

    SJU

    -M-W-F-

  5. CM145

    Copa Airlines

    02:29 pm

    SJO

    1.4h

    04:52 pm

    PTY

    SMTWTFS
    Search

  6. CM450

    Copa Airlines

    06:50 pm

    PTY

    2.9h

    10:41 pm

    SJU

    SMTWTFS

  7. CM343

    Copa Airlines

    03:07 pm

    SJO

    1.4h

    05:30 pm

    PTY

    SM-WT-S
    Search

  8. CM450

    Copa Airlines

    06:50 pm

    PTY

    2.9h

    10:41 pm

    SJU

    SMTWTFS

  9. AV033

    avianca

    03:45 pm

    SJO

    2.2h

    06:55 pm

    BOG

    S-T-T-S
    Search

  10. AV214

    avianca

    08:00 am

    BOG

    2.9h

    11:55 am

    SJU

    -M-W-F-

  11. CM461

    Copa Airlines

    04:10 am

    SJO

    1.4h

    06:33 am

    PTY

    SMTWTFS
    Search

  12. CM142

    Copa Airlines

    12:05 pm

    PTY

    2.9h

    03:56 pm

    SJU

    -----F-

  13. AV699

    avianca

    04:55 pm

    SJO

    2.3h

    08:10 pm

    BOG

    SMTWTFS
    Search

  14. AV214

    avianca

    08:00 am

    BOG

    2.9h

    11:55 am

    SJU

    -M-W-F-

  15. CM839

    Copa Airlines

    06:07 pm

    SJO

    1.4h

    08:30 pm

    PTY

    SMTWTFS
    Search

  16. CM142

    Copa Airlines

    12:05 pm

    PTY

    2.9h

    03:56 pm

    SJU

    -----F-

  17. CM392

    Copa Airlines

    08:09 am

    SJO

    1.4h

    10:32 am

    PTY

    SMTWTFS
    Search

  18. CM450

    Copa Airlines

    06:50 pm

    PTY

    2.9h

    10:41 pm

    SJU

    SMTWTFS

  19. CM392

    Copa Airlines

    08:09 am

    SJO

    1.4h

    10:32 am

    PTY

    SMTWTFS
    Search

  20. CM142

    Copa Airlines

    12:05 pm

    PTY

    2.9h

    03:56 pm

    SJU

    -----F-
Find more flights and airlines

When is the cheapest time to fly from San Jose to San Juan?

We monitor flight fares to help you find the best deals effortlessly

Displayed prices are calculated based on the cheapest average weekly prices of the corresponding route on Trip.com.

Frequently Asked Questions

  • When are flight tickets from San Jose (SJO) to San Juan (SJU) the cheapest?

    Airlines adjust prices for flights from San Jose to San Juan based on the departure date and time of your selection. By analyzing data from all airlines, we've discovered that on Trip.com, you can find the lowest flight prices on Tuesdays, Wednesdays, and Saturdays.

  • How much do flights from San Jose (SJO) to San Juan (SJU) cost?

    According to Trip.com's data, the lowest price is around JPY 74,754.

  • What is the transportation method from the main airport to downtown in San Juan?

    • The distance from Luis Muñoz Marín International Airport to downtown is about 11 km. It takes about 30 minutes by taxi.

How to find a cheap flight from San Jose to San Juan

Wait until the last minute and flight costs are often sky-high. Plan ahead, book the right way, and your savings can soar. We have loads of saving tips to help you find a cheap flight from San Jose to San Juan. Book your flights at the right time and save more.
1
Book Early
Once prices are gone, they're gone. Lock in deals while you can!
2
Compare Flight Prices
Compare prices on travel agency and airline websites.
3
Look Out for Deals
Check airline and travel agency websites for latest flight deals
4
Check One-way Fares
Buying two cheap one-way flights can sometimes be a better deal than a round-trip.
5
Try Different Dates
Flying during the week, early in the morning, or late at night can help save money.
6
Use the Trip.com App
Save up to £10 per person when booking your flights on Trip.com

Flight Info | San Jose to San Juan

Cheapest nonstop flight priceJPY 15,526
Cheapest round-trip ticket priceJPY 23,629
Off-season for travelApril
Peak season for travelNovember
Flight distance2,166.5 km
Popular airlineavianca

Contact Us

About

Other Services

Payment Methods
Our Partners
Copyright © 2025 Trip.com Travel Singapore Pte. Ltd. All rights reserved
Site Operator: Trip.com Travel Singapore Pte. Ltd.