App
Customer Support
IDR
Find Bookings
Worldwide Coverage
Worldwide Coverage
Flights to over 5,000 cities
One-stop Service Guarantee
One-stop Service Guarantee
Price guaranteed upon confirmed payment, booking guaranteed once tickets issued
Secure Payment
Secure Payment
Convenient & reliable booking and payment system

Cheap flight deals from Kota Kinabalu to El Nido Starting at IDR 2,782,123

We've found these cheap flights for you. You can book one-way or round-trip flight tickets.

  • One way
  • Round-trip
      • BKI06:55 pm
        24h 40m
        1 stop
        ENI07:35 pm
        Mon, Feb 17|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 2,782,123IDR 3,712,544
        25% OFF
        25% OFF
        IDR 3,712,544IDR 2,782,123

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Mon, Feb 17, arriving at El Nido ENI Airport. One-way Prices start from IDR 2,782,123 including taxes and charges.

      • BKI01:45 am
        17h 45m
        1 stop
        ENI07:30 pm
        Tue, May 13|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 2,837,989IDR 3,712,544
        24% OFF
        24% OFF
        IDR 3,712,544IDR 2,837,989

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Tue, May 13, arriving at El Nido ENI Airport. One-way Prices start from IDR 2,837,989 including taxes and charges.

      • BKI06:55 pm
        24h 40m
        1 stop
        ENI07:35 pm
        Wed, Mar 26|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 2,954,190IDR 3,712,544
        20% OFF
        20% OFF
        IDR 3,712,544IDR 2,954,190

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Wed, Mar 26, arriving at El Nido ENI Airport. One-way Prices start from IDR 2,954,190 including taxes and charges.

      • BKI06:55 pm
        11h 50m
        1 stop
        ENI06:45 am
        Mon, Feb 24|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,079,330
        IDR 3,079,330

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Mon, Feb 24, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,079,330 including taxes and charges.

      • BKI06:55 pm
        11h 50m
        1 stop
        ENI06:45 am
        Wed, Mar 5|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,083,799
        IDR 3,083,799

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Wed, Mar 5, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,083,799 including taxes and charges.

      • BKI06:55 pm
        24h 40m
        1 stop
        ENI07:35 pm
        Wed, Mar 19|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,086,034
        IDR 3,086,034

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Wed, Mar 19, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,086,034 including taxes and charges.

      • BKI06:55 pm
        11h 50m
        1 stop
        ENI06:45 am
        Fri, Mar 14|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,135,196
        IDR 3,135,196

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Fri, Mar 14, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,135,196 including taxes and charges.

      • BKI06:55 pm
        24h 40m
        1 stop
        ENI07:35 pm
        Mon, Mar 10|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,157,542
        IDR 3,157,542

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Mon, Mar 10, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,157,542 including taxes and charges.

      • BKI06:55 pm
        11h 50m
        1 stop
        ENI06:45 am
        Fri, Mar 21|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,224,581
        IDR 3,224,581

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Fri, Mar 21, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,224,581 including taxes and charges.

      • BKI06:55 pm
        13h 30m
        1 stop
        ENI08:25 am
        Fri, Mar 7|Kota Kinabalu - El Nido|Philippines AirAsia
        IDR 3,244,693
        IDR 3,244,693

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu International Airport on Fri, Mar 7, arriving at El Nido ENI Airport. One-way Prices start from IDR 3,244,693 including taxes and charges.

      • BKI01:00 pm
        3h 5m
        Nonstop
        ENI02:00 pm
        Sun, Feb 23|Kota Kinabalu - El Nido|Philippines AirAsia
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

Kota Kinabalu to El Nido Flight Time

Flight info.
Departure
Arrival
Weekly Schedule

  1. BI826

    Royal Brunei Airlines

    05:10 pm

    BKI

    0.7h

    05:50 pm

    BWN

    -----F-
    Search

  2. BI685

    Royal Brunei Airlines

    06:20 pm

    BWN

    2.4h

    08:45 pm

    MNL

    S--WT--

  3. T6110

    Island Air

    04:45 am

    MNL

    1.5h

    06:15 am

    ENI

    SMTWTFS

  4. MH2637

    Malaysia Airlines

    05:20 am

    BKI

    2.7h

    08:00 am

    KUL

    SMTWTFS
    Search

  5. MH804

    Malaysia Airlines

    05:25 pm

    KUL

    4.0h

    09:25 pm

    MNL

    SMTWTFS

  6. T6110

    Island Air

    04:45 am

    MNL

    1.5h

    06:15 am

    ENI

    SMTWTFS

  7. Z2502

    Philippines AirAsia

    06:55 pm

    BKI

    2.0h

    08:55 pm

    MNL

    S-T-T-S
    Search

  8. T6172

    Island Air

    06:00 pm

    MNL

    1.5h

    07:30 pm

    ENI

    SMTWTFS

  9. Z2502

    Philippines AirAsia

    06:55 pm

    BKI

    2.0h

    08:55 pm

    MNL

    S-T-T-S
    Search

  10. T6114

    Island Air

    05:55 am

    MNL

    1.5h

    07:25 am

    ENI

    SMTWTFS

  11. Z2502

    Philippines AirAsia

    06:55 pm

    BKI

    2.0h

    08:55 pm

    MNL

    S-T-T-S
    Search

  12. T6106

    Island Air

    04:30 am

    MNL

    1.5h

    06:00 am

    ENI

    SMTWTFS

  13. BI822

    Royal Brunei Airlines

    08:50 am

    BKI

    0.7h

    09:30 am

    BWN

    -M--T-S
    Search

  14. BI683

    Royal Brunei Airlines

    11:55 am

    BWN

    2.3h

    02:10 pm

    MNL

    --T---S

  15. T6172

    Island Air

    06:00 pm

    MNL

    1.5h

    07:30 pm

    ENI

    SMTWTFS

  16. TR493

    Scoot

    09:35 pm

    BKI

    2.5h

    12:05 am

    SIN

    --T-T-S
    Search

  17. TR396

    Scoot

    01:45 am

    SIN

    3.8h

    05:30 am

    MNL

    SMTWTFS

  18. T6172

    Island Air

    06:00 pm

    MNL

    1.5h

    07:30 pm

    ENI

    SMTWTFS

  19. BI828

    Royal Brunei Airlines

    09:45 pm

    BKI

    0.7h

    10:25 pm

    BWN

    -M-WT-S
    Search

  20. BI685

    Royal Brunei Airlines

    06:20 pm

    BWN

    2.4h

    08:45 pm

    MNL

    S--WT--

  21. T6106

    Island Air

    04:30 am

    MNL

    1.5h

    06:00 am

    ENI

    SMTWTFS

  22. BI828

    Royal Brunei Airlines

    09:45 pm

    BKI

    0.7h

    10:25 pm

    BWN

    -M-WT-S
    Search

  23. BI683

    Royal Brunei Airlines

    11:55 am

    BWN

    2.3h

    02:10 pm

    MNL

    --T---S

  24. T6172

    Island Air

    06:00 pm

    MNL

    1.5h

    07:30 pm

    ENI

    SMTWTFS

  25. TR491

    Scoot

    12:30 pm

    BKI

    2.7h

    03:10 pm

    SIN

    SM-W-F-
    Search

  26. TR396

    Scoot

    01:45 am

    SIN

    3.8h

    05:30 am

    MNL

    SMTWTFS

  27. T6172

    Island Air

    06:00 pm

    MNL

    1.5h

    07:30 pm

    ENI

    SMTWTFS
Find more flights and airlines

When is the cheapest time to fly from Kota Kinabalu to El Nido?

We monitor flight fares to help you find the best deals effortlessly

Displayed prices are calculated based on the cheapest average weekly prices of the corresponding route on Trip.com.

Frequently Asked Questions

  • When are flight tickets from Kota Kinabalu (BKI) to El Nido (ENI) the cheapest?

    Airlines adjust prices for flights from Kota Kinabalu to El Nido based on the departure date and time of your selection. By analyzing data from all airlines, we've discovered that on Trip.com, you can find the lowest flight prices on Tuesdays, Wednesdays, and Saturdays.

  • How much do flights from Kota Kinabalu (BKI) to El Nido (ENI) cost?

    According to Trip.com's data, the lowest price is around IDR 5,988,826.

  • What is the transportation method from the main airport to downtown in El Nido?

    • The distance from El Nido ENI Airport to downtown is about 5 km. It takes about 20 minutes by taxi.

How to find a cheap flight from Kota Kinabalu to El Nido

Wait until the last minute and flight costs are often sky-high. Plan ahead, book the right way, and your savings can soar. We have loads of saving tips to help you find a cheap flight from Kota Kinabalu to El Nido. Book your flights at the right time and save more.
1
Book Early
Once prices are gone, they're gone. Lock in deals while you can!
2
Compare Flight Prices
Compare prices on travel agency and airline websites.
3
Look Out for Deals
Check airline and travel agency websites for latest flight deals
4
Check One-way Fares
Buying two cheap one-way flights can sometimes be a better deal than a round-trip.
5
Try Different Dates
Flying during the week, early in the morning, or late at night can help save money.
6
Use the Trip.com App
Save up to £10 per person when booking your flights on Trip.com

Flight Info | Kota Kinabalu to El Nido

Cheapest nonstop flight priceIDR 2,782,122
Off-season for travelMarch
Peak season for travelNovember
Flight distance692.41 km
Popular airlinePhilippines AirAsia

Contact Us

About

Other Services

Payment Methods
Our Partners
Copyright © 2025 Trip.com Travel Singapore Pte. Ltd. All rights reserved
Site Operator: Trip.com Travel Singapore Pte. Ltd.